PATHOGENE
Sample QC
Unreviewed
Annotation Key
Tumor
Stroma
Other / In-situ
Lymphocyte
CosMx Cell Overlay
Gene
Hybrid rendering enabled: fast 4096px overview + sharp deep-zoom refresh.
Gene list will appear after the data load.
Low
Mid
High
Available for slides with gene-expression data.
Alignment Debug
Draw Annotation
Select a class, enable Freehand Lasso, then drag around the region and release to create a polygon.
Selection strength: —
Select a class, enable Magic Wand, then press inside tissue and drag. A longer drag expands the color-selection range. Release to preview, then Apply Wand.
After import, click a polygon to select it and drag its vertex handles to correct the shape.
To change its class, select Tumor/Stroma/Other/Lymphocyte above and click Apply Class.
AI GeoJSON: not loaded
Segmentation Evaluation
GT: not loaded
AI: not loaded
AI Lymphocyte Threshold
Score Distribution
—
Displayed
—
Of Total
—
Hidden
No data loaded
No demo slides found. Add pre-generated DZI data under data/tiles.